PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G271400.1
Common NameB456_009G271400, LOC105771316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 223aa    MW: 24164.2 Da    PI: 5.9794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G271400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183786255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r  r +lg+f+ta eAa  ++ a++kl+g
  Gorai.009G271400.1 37 TYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTALEAAMTYDSAARKLYG 86
                        69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-303696No hitNo description
PfamPF008471.8E-123786IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-203795IPR016177DNA-binding domain
PROSITE profilePS5103221.8653794IPR001471AP2/ERF domain
SMARTSM003801.3E-3437100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-303795IPR001471AP2/ERF domain
PRINTSPR003672.6E-93849IPR001471AP2/ERF domain
PRINTSPR003672.6E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGGSGSGEKK LVKKRAQASS RKGCMRGKGG PENALCTYKG VRQRTWGKWV AEIREPNRGS  60
RLWLGTFDTA LEAAMTYDSA ARKLYGSDAK LNLPHLCVNS RFPPPSSNTQ VAPIGNQPLN  120
ATTSSPNSPI IIRVDEVTPV SNSESDMSQG NMVANNAKFG QNQEENGGFW ENMTMNLPVL  180
DDSIWAEAVM SLDFPVMDDP SIFGTSLVDT TGWDALQTPW CM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448193.11e-166PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0D2TSK51e-166A0A0D2TSK5_G
STRINGPOPTR_0005s25470.12e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-55ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]